PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_763_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 271aa    MW: 29130.3 Da    PI: 8.8478
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_763_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002284106123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                         ++C++C + F ++  L  H++ H
  cra_locus_763_iso_4_len_1120_ver_3  84 FSCNYCQRKFYSSQALGGHQNAH 106
                                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-682111No hitNo description
PROSITE profilePS5015711.42784111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKEAAGKEPS EESNSSIDNS MEENPTQENT KDSHVVHHVL EGNFKKPDEL NLIDSLHDQK  60
NSSSSSILLE QQPSSDDQQP ARVFSCNYCQ RKFYSSQALG GHQNAHKRER TIAKRGQRIG  120
ANNNATATSS SFGPFSSTMA SLPLHGTFNR SLGIQAHSMI HKPSSNCFNN VGLLPTMFGH  180
HHGGGGGGAW SRKPLDQQPA IGRLAPENYH MGSSLLGTSS SGGGGGGAKA ARFDSFTKFS  240
SPAVVAMADG FKPPLRTNQD ELKKLDLTLK L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272545.13e-64PREDICTED: zinc finger protein 1
SwissprotQ392623e-39ZFP3_ARATH; Zinc finger protein 3
TrEMBLA5BQW11e-64A5BQW1_VITVI; Putative uncharacterized protein
STRINGVIT_09s0002g09080.t018e-64(Vitis vinifera)